The genomics era is officially upon us. Not that long ago—in 2003—we were celebrating the monumental achievement that scientists had sequenced the human genome. Just over a decade later, technological advancements have made it possible to efficiently collect information from across the genome of virtually any organism. Rapid advances in scientific technology are often difficult to keep pace with, especially for scientists who don't specialize in that particular field, and genomics is no exception. For that reason, my colleagues at the U.S. Geological Survey and I wrote a genomics review paper directed at ornithologists interested in questions related to ecology and conservation. We discuss the basics of genomics approaches and highlight research questions that can be answered with this new technology, including questions related to population ecology, disease transmission, migration tracking, and conservation planning. Click on the title below to access the article:

SJ Oyler-McCance, KP Oh, KM Langin, and CL Aldridge. 2016. A field ornithologist's guide to genomics: practical considerations for ecology and conservation. Auk: Ornithological Advances 133: 626-648


- popular story I wrote about my Ph.D. research for the Fall 2015 issue of Boom: A Journal of California (link here); it was modified from an earlier story published by Slate (see Feb. 2015 post)

In 1835, a young naturalist named Charles Darwin set foot on a peculiar land. Giant tortoises lumbered over barren lava fields, iguanas took to the sea in search of food, and some birds were utterly incapable of flight. He spent several weeks there—on an archipelago called the Galápagos—collecting specimens and observing the remarkable biodiversity in front of him. Many organisms were similar to species Darwin had observed on the South American mainland, but they were clearly distinct, with characteristics that made them well-suited to their island home.

Ecuador’s Galápagos Islands played an out-sized role in seeding Darwin’s ideas about evolution and the origin of species, but among islands they are not unique. Archipelagos are renowned for housing bizarre creatures, thanks to their isolation.

That’s why, as a biologist, I was thrilled when I got a chance to work on the California Channel Islands. I knew I’d find diminutive foxes and supersized jays. What I didn’t know was even more interesting. As I later learned, there was even more to the islands’ biodiversity than met the eye.

The California Channel Islands are made up of eight stunningly beautiful islands: San Miguel, Santa Rosa, Santa Cruz, Anacapa, Santa Barbara, San Nicolas, Santa Catalina, and San Clemente. Many are visible from the beaches of southern California, but they have never been connected to the mainland and house a rich diversity of species found nowhere else. They’re home to towering peaks, vast inland valleys, picturesque white sand beaches, and one of the largest sea caves in the world. They also share a remarkably similar evolutionary story with the Galápagos—a story about bird beaks.

Read the rest of the story here.


- popular story I wrote about my Ph.D. research, published by Slate (link here)

When I first stepped foot on California’s picturesque Santa Cruz Island, I was in awe. The foxes were tame, the jays were supersized, and the wildflowers grew like trees. I knew that islands were renowned for harboring unusual species. But I didn’t know that there was more to the biodiversity of this small island than met the eye—let alone that I would play a role in discovering it.

Islands have played a central role in the quest to uncover how evolution operates. A comparison of species on the Galápagos Islands and neighboring South America seeded Charles Darwin’s insight that similar species share a common ancestor. And later work on Darwin’s finches revealed that evolution isn’t just a slow, steady process spread out over millennia; it can occur rapidly and alter the characteristics of a population from one year to the next.

Islands are the test tubes of nature. Depending on the island (and the species) in question, many of them are closed off, rarely playing host to immigrants. This isolation allows species to adapt to the characteristics of their particular island home without the potentially meddlesome influence of “foreign” genes brought in by individuals from faraway lands. That’s why islands are hotbeds for the generation of new species.

But, as I found out on Santa Cruz Island, evolution doesn’t stop there. The process can also generate biodiversity within islands, not just as you go from one island to another. This came to light during my Ph.D. research spent studying a brilliant blue bird called the island scrub-jay, found only on Santa Cruz.

Read the rest of the story here.


- popular story, published by National Geographic News (link)

Don't let their hulking mass fool you: Male sea lions are actually mama's boys.

In the first couple of years after birth, sea lion sons seem to be more reliant on their mothers—consuming more milk and sticking closer to home—than sea lion daughters are, according to a study on Galápagos sea lions published in the December issue of the journal Animal Behaviour.

The young males venture out to sea on occasion, but their female counterparts dive for their own food much more often.

The curious thing is, it's not like the young males aren't capable of diving. As one-year-olds, males can dive to the same depth as females (33 feet, or 10 meters, on a typical dive).

It's also not like their mother's milk is always on hand. Sea lion moms frequently leave their growing offspring for days at a time to find food at sea. 

And yet, despite all this, for some reason sons are far less likely than daughters to take to the sea and seek out their own food.

"We always saw the [young] males around the colony surfing in tide pools, pulling the tails of marine iguanas, resting, sleeping," said Paolo Piedrahita, a Ph.D. student at Bielefeld University in Germany and the lead author of the study.

"It's amazing. You can see an animal—40 kilograms [88 pounds]—just resting, waiting for mom."

Read the rest of the story here.


- popular story, published by National Geographic News (link)

We're not the only species that can recognize voices in the womb: Inside the egg, tiny songbirds called superb fairy wrens can discriminate sounds from different birds of their own species, a new study reveals.

The embryos pay attention to surrounding noises and can tell if they are listening to calls from a fairy wren they haven't heard before, according to the study, published October 28 in the journal Proceedings of the Royal Society B. The findings represent the first time a species other than humans has been shown to distinguish between individuals in utero.

This remarkable ability allows growing embryos to learn a "password" from their mother, which they then use to beg for food upon hatching.

"We have tended to use birth or hatching as the starting point for the development of behavior," said Robert Lickliter, a developmental psychologist at Florida International University in Miami, who was not involved in the study. 

"This work shows that it's worth going back further in development to see where the roots of behavior come from."

Read the rest of the story here.

Graduation! Wearing my grandfather's 61-year-old Ph.D. gown.

Graduation! Wearing my grandfather's 61-year-old Ph.D. gown.


Hello, and welcome to my new website! I have recently gone through some major life changes—having finished my Ph.D. and undergone training to be a science writer—so I thought it was high time to abandon my graduate-student website and develop a new online presence. I plan to use this blog space to provide periodic updates about my activities, published works, and thoughts. Please come back later to check out what I've been up to.